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Schedule, Notes/Handouts & Videos

MSRI Summer Graduate Workshop: Mathematical aspects of computational biology June 19, 2006 - June 30, 2006

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Jun 19, 2006
Monday
09:00 AM - 10:00 AM
  Mathematical Aspects of Computational Biology
Reinhard Laubenbacher (Virginia Polytechnic Institute and State University)
02:00 PM - 03:00 PM
  A Segment Polarity Network in Drosophilia Melanogaster
Brandilyn Stigler
03:00 PM - 04:00 PM
  Discrete Modeling Paradigms
Reinhard Laubenbacher (Virginia Polytechnic Institute and State University)
Jun 20, 2006
Tuesday
09:00 AM - 10:00 AM
  Introduction to Reverse Engineering
Reinhard Laubenbacher (Virginia Polytechnic Institute and State University)
10:30 AM - 11:30 AM
  Introduction to Computational Algebra
Reinhard Laubenbacher (Virginia Polytechnic Institute and State University)
02:00 PM - 03:00 PM
  Software PAckages for Computational Biology
Brandilyn Stigler
Jun 21, 2006
Wednesday
09:00 AM - 10:00 AM
  Reverse Engineering of Networks
Reinhard Laubenbacher (Virginia Polytechnic Institute and State University)
02:00 PM - 03:00 PM
  Reverse Engineering the Segment Polarity Network
Brandilyn Stigler
Jun 22, 2006
Thursday
09:00 AM - 10:00 AM
  Algebraic Statistics for Computational Biology
10:30 AM - 11:30 AM
  Parametic Alignment and Conservation of Cis-Regulatory Elements
02:00 PM - 03:00 PM
  Robustness of Spatial Patterning
Hans Othmer
Jun 23, 2006
Friday
09:00 AM - 10:00 AM
  Introduction to the Mathematics of Phylogenomics
02:00 PM - 03:00 PM
  Talk- Mathematical Aspects of Computational Biology
Jun 24, 2006
Saturday
10:30 AM - 11:30 AM
  Talk- Mathematical Aspects of Computational Biology
Jun 26, 2006
Monday
09:00 AM - 10:00 AM
  Talk- Mathematical Aspects of Computational Biology
02:00 PM - 03:00 PM
  Epistasis and Shapes of Fitness and Landscapes
03:30 PM - 04:30 PM
  Evolution on Distributive Lattices
Nicholas Eriksson
Jun 27, 2006
Tuesday
09:00 AM - 10:00 AM
  Talk- Mathematical Aspects of Computational Biology
Jason Morton (Pennsylvania State University)
02:00 PM - 03:00 PM
  Talk- Mathematical Aspects of Computational Biology
Ariel Schwartz
Jun 28, 2006
Wednesday
02:00 PM - 03:00 PM
  Talk- Mathematical Aspects of Computational Biology
Jun 29, 2006
Thursday
09:00 AM - 10:00 AM
  Group work- Mathematical Aspects of Computational Biology
10:30 AM - 11:30 AM
  Group work- Mathematical Aspects of Computational Biology
02:00 PM - 03:30 PM
  Grobner Bases
Bernd Sturmfels (University of California, Berkeley; Max-Planck-Institut für Mathematik in den Naturwissenschaften)
Jun 30, 2006
Friday
09:00 AM - 10:00 AM
  Longest Identity Sequence
Yu Huang
10:00 AM - 11:00 AM
  Talk- Mathematical Aspects of Computational Biology
Oliver Wienand
11:00 AM - 12:00 PM
  Talk- Mathematical Aspects of Computational Biology
Oliver Wienand
12:00 PM - 12:30 PM
  Talk- Mathematical Aspects of Computational Biology
Michael Mehan
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