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Schedule, Notes/Handouts & Videos

Mathematical Topics in Systems Biology June 29, 2015 - July 10, 2015

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Jun 29, 2015
Monday
09:15 AM - 09:30 AM
  Welcome, introductions, and basic overview
09:30 AM - 10:30 AM
  Course overview
10:30 AM - 10:45 AM
  Break
10:45 AM - 11:45 AM
  Lecture: Fly neural superposition (Altschuler)
Steven Altschuler (University of California, San Francisco)
11:45 AM - 12:00 PM
  Team questions (acquired vs pre-existing mutations)
12:00 PM - 02:00 PM
  Lunch
02:00 PM - 03:00 PM
  Case study: acquired vs pre-existing mutations (Altschuler)
Steven Altschuler (University of California, San Francisco)
03:00 PM - 03:30 PM
  Tea
03:30 PM - 04:30 PM
  MATLAB warmup (TAs)
Jun 30, 2015
Tuesday
09:30 AM - 10:30 AM
  Team discussion
10:30 AM - 10:45 AM
  Break
10:45 AM - 12:00 PM
  Team program
12:00 PM - 02:00 PM
  Lunch
02:00 PM - 03:00 PM
  Team Presentation
03:00 PM - 03:30 PM
  Tea
03:30 PM - 04:30 PM
  Team program
Satwik Rajaram (University of California, San Francisco)
Jul 01, 2015
Wednesday
09:30 AM - 09:45 AM
  Team questions (polarity)
09:45 AM - 10:30 AM
  Lecture: Yeast polarity (Wu)
Lani Wu (University of California, San Francisco)
10:30 AM - 10:45 AM
  Break
10:45 AM - 11:30 AM
  Case study: Stochastic polarity
Steven Altschuler (University of California, San Francisco)
11:30 AM - 02:00 PM
  BBQ Lunch
02:00 PM - 03:00 PM
  Team discussion
03:00 PM - 03:30 PM
  Tea
03:30 PM - 04:30 PM
  Team program
Jul 02, 2015
Thursday
09:30 AM - 10:30 PM
  Team program
10:30 AM - 10:45 AM
  Break
10:45 AM - 12:00 PM
  Team program
12:00 PM - 02:00 PM
  Lunch
02:00 PM - 03:00 PM
  Team Presentation
03:00 PM - 03:30 PM
  Tea
03:30 PM - 04:30 PM
  Lecture: Immunology and gradient sensing (Thurley) & discussion
Kevin Thurley (University of California, San Francisco)
Jul 03, 2015
Friday
09:30 AM - 09:45 AM
  Team questions: phenotypic heterogeneity
09:45 AM - 10:30 AM
  Lecture: Phenotypic heterogeneity
Steven Altschuler (University of California, San Francisco)
10:45 AM - 12:00 PM
  Lecture: Phenotypic profiling
Lani Wu (University of California, San Francisco)
12:00 PM - 02:00 PM
  Lunch
02:00 PM - 03:00 PM
  Case study &Team discussion: Foreground identification
Steven Altschuler (University of California, San Francisco)
03:00 PM - 03:30 PM
  Tea
03:30 PM - 04:30 PM
  Guest lecture: Leor Weinberger
Jul 06, 2015
Monday
09:30 AM - 10:30 PM
  Team presentation
10:30 AM - 12:00 PM
  Case study &Team discussion: Cell region identification
Steven Altschuler (University of California, San Francisco)
10:30 AM - 10:45 AM
  Break
12:00 PM - 02:00 PM
  Lunch
02:00 PM - 03:00 PM
  Team program
03:00 PM - 03:30 PM
  Tea
03:30 PM - 04:30 PM
  Team program
Jul 07, 2015
Tuesday
09:30 AM - 10:30 AM
  Team Presentation
10:30 AM - 10:45 AM
  Break
10:45 AM - 12:00 PM
  Guest lecture: Matt Jacobson
12:00 PM - 02:00 PM
  Lunch
02:00 PM - 03:00 PM
  Case study &Team project: Cell cycle detector
Satwik Rajaram (University of California, San Francisco)
03:00 PM - 03:30 PM
  Tea
03:30 PM - 04:30 PM
  Team program
Jul 08, 2015
Wednesday
09:30 AM - 10:30 AM
  Team Presentation
10:30 AM - 10:45 AM
  Break
10:45 AM - 12:00 PM
  Case study &Team project (Phenotypic profiling)
12:00 PM - 01:00 PM
  Lunch
01:00 PM - 02:00 PM
  Guest lecture on professional development: Francis Edward Su
02:00 PM - 03:00 PM
  Team program
03:00 PM - 03:30 PM
  Tea
03:30 PM - 04:30 PM
  Lectures: ORACLs (Hsu), PhenoRipper
Satwik Rajaram (University of California, San Francisco)
Jul 09, 2015
Thursday
09:30 AM - 10:30 AM
  Guest lecture: Orion Weiner
10:30 AM - 10:45 AM
  Break
10:45 AM - 11:15 PM
  Team Presentation
11:15 AM - 12:00 PM
  Case study: Causal inference (Altschuler/Hsu)
Steven Altschuler (University of California, San Francisco)
12:00 PM - 02:00 PM
  Lunch
02:00 PM - 03:00 PM
  Team program
03:00 PM - 03:30 PM
  Tea
03:30 PM - 04:30 PM
  Team program
Jul 10, 2015
Friday
09:30 AM - 10:30 AM
  Lecture: network crosstalk (Wu) & discussion
Lani Wu (University of California, San Francisco)
10:30 AM - 10:45 AM
  Break
10:45 AM - 12:00 PM
  Team program
12:00 PM - 02:00 PM
  Lunch
02:00 PM - 03:00 PM
  Team Presentation
03:00 PM - 03:30 PM
  Tea
03:30 PM - 04:30 PM
  Team Presentation & Wrap up
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