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Schedule, Notes/Handouts & Videos

Mathematical Systems Biology of Cancer May 03, 2006 - May 05, 2006

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May 03, 2006
Wednesday
09:00 AM - 09:40 AM
  Analysis of gene expression and CGH
Jane Fridlyand
09:40 AM - 10:10 AM
  Analysis of reverse-phase protein
Keith Baggerly
10:10 AM - 10:30 AM
  Normalization of Western blots"
Frances Tong
11:00 AM - 12:00 PM
  Predicting response to pathway targeted cancer therapies;
Joe Gray (Lawrence Berkeley Laboratory)
01:30 PM - 02:30 PM
  Hybrid system models for protein
Claire Tomlin
02:30 PM - 03:30 PM
  The ICBP data set; an EPHA2 example
Rich Neve
04:00 PM - 05:00 PM
  Using the adjoint method for
Claire Tomlin
May 04, 2006
Thursday
08:30 AM - 09:30 AM
  Pathway Modelling
Paul Spellman (Lawrence Berkeley Laboratory)
09:15 AM - 10:00 AM
  3D models of normal and malignant breast epithelial cells
Paraic Kenny
11:15 AM - 12:15 PM
  Pathway Logic Models"
Carolyn Talcott (SRI International)
01:45 PM - 02:30 PM
  Integrative Radiation Biology
Mary-Helen Barcellos-Hoff
04:00 PM - 05:00 PM
  Inheritance of Loss: Computational Systems Biology for Cancer
Bud Mishra
May 05, 2006
Friday
08:30 AM - 09:15 AM
  Computational bioimaging and informatics, I
Damir Sudar
09:15 AM - 10:00 AM
  Computational bioimaging and informatics, II
Bahram Parvin
10:00 AM - 10:45 AM
  Optimal binning strategies"
Larry Lok
11:15 AM - 12:15 PM
  Protein network comparative genomics
Trey Ideker
01:30 PM - 02:30 PM
  Identifying cancer genetic network signature from integrative microarray analysis
Jasmine Zhou
02:30 PM - 03:30 PM
  Analysis of large-scale alterations in tumor genomes
Ben Raphael
04:00 PM - 05:00 PM
  Network Analysis of Gene Expression Kinetics in Human Breast Cancer Cells
Steve Ethier
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