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Schedule, Notes/Handouts & Videos

MSRI/PMMB Short Course: Mathematical and Computational Challenges in Molecular and Cell Biology June 12, 2000 - June 23, 2000

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Jun 12, 2000
Monday
08:00 AM - 05:00 PM
  Geometry and Topology of DNA
James White
08:00 AM - 05:00 PM
  Extracting Regulatory Motifs from Genomes and Microarray data
Eric Siggia
08:00 AM - 05:00 PM
  1. Monte Carlo Likelihood for genetic analyses and 2. Coalescents, phylogenies, and disequilibrium mapping
Elizabeth Thompson
08:00 AM - 05:00 PM
  How are centimeter-long chromosomes dealt with inside micron-scalecells?
John Marko
08:00 AM - 05:00 PM
  Construction of human expressed sequence tag (EST) contigs and their usein estimating gene number
Philip Green
08:00 AM - 05:00 PM
  Elastic properties of twisted stretched single DNA
David Bensimon
08:00 AM - 05:00 PM
  Linkage Analysis of Complex Human Traits Using Identity by Descent Data
Sandrine Dudoit
08:00 AM - 05:00 PM
  RNA Structure and Function
Ignacio Tinoco
08:00 AM - 05:00 PM
  Singular Value Decomposition for Genome-Wide Expression Data Processing and Modeling
Orly Alter
08:00 AM - 05:00 PM
  Large-scale conformational properties of DNA
Alexander Vologodskii
08:00 AM - 05:00 PM
  Modern Theory of Gel Electrophoresis
Steve Levene
08:00 AM - 05:00 PM
  DNA Knots
De Witt Sumners
08:00 AM - 05:00 PM
  Basic Biology for NonBiologists
Sylvia Spengler
08:00 AM - 05:00 PM
  Molecular Dynamics Simulation of Proteins and Nucleic Acids
Michael Levitt
08:00 AM - 05:00 PM
  Transertion, gene silencing, and DNA supercoiling in bacteria
James Wang
08:00 AM - 05:00 PM
  Prediction and design of protein structures and folding mechanisms
David Baker
08:00 AM - 05:00 PM
  Some Combinatorial and Algorithmic Problems Related to DNA Microarrays
Richard Karp
08:00 AM - 05:00 PM
  Mechanisms of DNA Unlinking and Chromosome Segregation
Nick Cozzarelli
08:00 AM - 05:00 PM
  DNA Sequence and Three-dimensional Structure
Wilma Olson
08:00 AM - 05:00 PM
  The Mathematics of Gene Recognition
Lior Pachter
08:00 AM - 05:00 PM
  Protein Structure Prediction
Ram Samudrala
08:00 AM - 05:00 PM
  Molecular evolution and database searching
Terry Speed
08:00 AM - 05:00 PM
  Chromosome maps
Terry Speed
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